PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0370s00260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 155aa    MW: 17575.9 Da    PI: 7.9993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0370s00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11721012856
               AP2  28 r.krfslgkfgtaeeAakaaiaarkklege 56 
                       + +r++lg+f taeeAa+a+++a+ +++g+
  Vang0370s00260.1  72 NgARVWLGTFNTAEEAARAYDRAAFEMRGA 101
                       349*************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.5139108IPR001471AP2/ERF domain
SMARTSM003805.2E-1360114IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1466110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-1967109IPR001471AP2/ERF domain
CDDcd000186.20E-1972109No hitNo description
PfamPF008475.0E-872100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPPKRATRFY RSNVRRIQQS DQFGIPMTSS VTVILSQNPS CLISATNLDK DRFHISDQGR  60
FPILCFRDSA RNGARVWLGT FNTAEEAARA YDRAAFEMRG AMAILNFPHE HPPFTSSSKT  120
EHAKQVVVFE CLDDKLLEEL LDCDHKNMNH NFAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16671081960ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-16671082263ATERF1
3gcc_A2e-16671082263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-148AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494962.14e-61PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC53e-26ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9T3M05e-61A0A0L9T3M0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RY635e-61A0A0S3RY63_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-13ERF family protein